Bismuth iron garnet films for magneto-optical photonic crystals

The thesis explores preparation and properties of bismuthiron garnet (BIG) films and the incorporation of BIG films intoone-dimensional magneto-optical photonic crystals (MOPCs). Films were prepared by pulsed laser deposition. Weinvestigated or measured crystallinity, morphology,film-substrate interface, cracks, roughness, composition,magnetic coercivity, refractive index and extinctioncoefficient, and magneto-optical Faraday rotation (FR) andellipticity. The investigations were partly performed onselected samples, and partly on two series of films ondifferent substrates and of different thicknesses. BIG filmswere successfully tested for the application of magneto-opticalvisualization. The effect of annealing in oxygen atmosphere wasalso investigated - very careful annealing can increase FR byup to 20%. A smaller number of the above mentionedinvestigations were carried out on yttrium iron garnet (YIG)films as well. Periodical BIG-YIG multilayers with up to 25 single layerswere designed and prepared with the purpose to enhance FR at aselected wavelength. A central BIG layer was introduced asdefect layer into the MOPC structure and generated resonancesin optical transmittance and FR at a chosen design wavelength.In a 17- layer structure, at the wavelength of 748 nm, FR wasincreased from -2.6 deg/µm to -6.3 deg/µmat a smallreduction in transmittance from 69% to 58% as compared to asingle-layer BIG film of equivalent thickness. In contrast tothick BIG films, the MOPCs did not crack. We were first toreport preparation of all-garnet MOPCs and second toexperimentally demonstrate the MOPC principle inmagneto-optical garnets

Tensile Failure of Thin Aluminium Sheet Observed by In-Situ EBSD

Tensile tests on two similar 75-μm-thick aluminium sheet materials were carried out inside a scanning electron microscope equipped with an electron backscatter detector. The materials were subjected to simulated brazing prior to the test because this type of material is used for fins in automotive heat exchangers. Grain sizes were large relative to sheet thickness and ND-rotated cube and P texture components dominated the recrystallization textures; their volume fractions differed strongly in the two different materials, though. Strains over the microscope image fields were determined from positions of constituent particles or from grain sizes; the two methods gave consistent results. Grains with high Schmid factors accumulated significantly more deformation than grains with low Schmid factors. Cracks nucleated in high-Schmid factor grains, or in groups of such grains, at the specimen edges. When only low-Schmid factor grains were present at the specimen edges, the crack nucleated inside the specimen. The subsequent crack growth was intragranular and occurred at approximately 90° relative to the load direction

Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells

Background: The interaction of eukaryotic host and prokaryotic pathogen cells is linked to specific changes in the cellular proteome, and consequently to infection-related gene expression patterns of the involved cells. To simultaneously assess the transcriptomes of both organisms during their interaction we developed dual 3'Seq, a tag-based sequencing protocol that allows for exact quantification of differentially expressed transcripts in interacting pro-and eukaryotic cells without prior fixation or physical disruption of the interaction. Results: Human epithelial cells were infected with Salmonella enterica Typhimurium as a model system for invasion of the intestinal epithelium, and the transcriptional response of the infected host cells together with the differential expression of invading and intracellular pathogen cells was determined by dual 3'Seq coupled with the next-generation sequencing-based transcriptome profiling technique deepSuperSAGE (deep Serial Analysis of Gene Expression). Annotation to reference transcriptomes comprising the operon structure of the employed S. enterica Typhimurium strain allowed for in silico separation of the interacting cells including quantification of polycistronic RNAs. Eighty-nine percent of the known loci are found to be transcribed in prokaryotic cells prior or subsequent to infection of the host, while 75% of all protein-coding loci are represented in the polyadenylated transcriptomes of human host cells. Conclusions: Dual 3'Seq was alternatively coupled to MACE (Massive Analysis of cDNA ends) to assess the advantages and drawbacks of a library preparation procedure that allows for sequencing of longer fragments. Additionally, the identified expression patterns of both organisms were validated by qRT-PCR using three independent biological replicates, which confirmed that RELB along with NFKB1 and NFKB2 are involved in the initial immune response of epithelial cells after infection with S. enterica Typhimurium

Substrate bias effects on cathodic arc deposited Cr coatings

We investigate the effects of substrate bias on cathodic arc deposition of Cr coatings without external substrate heating at four different substrate bias levels, floating, −30, −50, and −70 V. After 10 min of deposition, the substrate temperature reaches 180, 210, 230, and 260 °C for floating potential, −30, −50, and −70 V, respectively. Time-of-flight energy elastic recoil detection analysis shows that all grown coatings are of high purity, with no coating containing more than 0.2 at.% of C and/or O. Increasing the substrate bias also reduces the number of macroparticles, steers the texture from preferred [110]- to [100]-orientation and induces a residual compressive stress of ∼450 MPa in the coatings. The hardness of the coatings remains at a constant 7.5 GPa irrespective of the substrate bias. The four-point probe resistivity of the grown coatings is 15–17 μΩcm regardless of substrate bias, close to the 12.9 μΩcm of bulk Cr

APADB : a database for alternative polyadenylation and microRNA regulation events

Alternative polyadenylation (APA) is a widespread mechanism that contributes to the sophisticated dynamics of gene regulation. Approximately 50% of all protein-coding human genes harbor multiple polyadenylation (PA) sites; their selective and combinatorial use gives rise to transcript variants with differing length of their 3' untranslated region (3'UTR). Shortened variants escape UTR-mediated regulation by microRNAs (miRNAs), especially in cancer, where global 3'UTR shortening accelerates disease progression, dedifferentiation and proliferation. Here we present APADB, a database of vertebrate PA sites determined by 3' end sequencing, using massive analysis of complementary DNA ends. APADB provides (A)PA sites for coding and non-coding transcripts of human, mouse and chicken genes. For human and mouse, several tissue types, including different cancer specimens, are available. APADB records the loss of predicted miRNA binding sites and visualizes next-generation sequencing reads that support each PA site in a genome browser. The database tables can either be browsed according to organism and tissue or alternatively searched for a gene of interest. APADB is the largest database of APA in human, chicken and mouse. The stored information provides experimental evidence for thousands of PA sites and APA events. APADB combines 3' end sequencing data with prediction algorithms of miRNA binding sites, allowing to further improve prediction algorithms. Current databases lack correct information about 3'UTR lengths, especially for chicken, and APADB provides necessary information to close this gap. Database URL: http://tools.genxpro.net/apadb

Tensile, Fatigue and Creep Properties of Aluminum Heat Exhanger Tube Alloys for Temperatures from 293 K to 573 K (20°C to 300°C)

Since automotive heat exchangers are operated at varying temperatures and under varying pressures, both static and dynamic mechanical properties should be known at different temperatures. Tubes are the most critical part of the most heat exchangers made from aluminum brazing sheet. We present tensile test, stress amplitude-fatigue life, and creep–rupture data of six AA3XXX series tube alloys after simulated brazing for temperatures ranging from 293 K to 573 K (20 °C to 300 °C). While correlations between several mechanical properties are strong, ranking of alloys according to one property cannot be safely deduced from the known ranking according to another property. The relative reduction in creep strength with increasing temperature is very similar for all six alloys, but the general trends are also strong with respect to tensile and fatigue properties; an exception is one alloy that exhibits strong Mg-Si precipitation activity during fatigue testing at elevated temperatures. Interrupted fatigue tests indicated that the crack growth time is negligible compared to the crack initiation time. Fatigue lifetimes are reduced by creep processes for temperatures above approximately 423 K (150 °C). When mechanical properties were measured at several temperatures, interpolation to other temperatures within the same temperature range was possible in most cases, using simple and well-established equations